Proteomics


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Proteomics Standards Initiative  v.2.0.0

The Proteomics Standards Initiative (PSI) aims to define community standards for data representation in proteomics to facilitate data comparision, exchange and verification.

Rover  v.2.3.4

Rover is a software to visualize and validate quantitative proteomics data from different sources. Manual validation of regulated proteins in quantitative proteomics has always been a tedious process.





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SPADE  v.1.3

Build bioinformatics applications with this tool. The Structural Proteomics Application Development Environment (SPADE) is a free, Python-based, structural biology analysis and modeling toolkit,

MzIdentML Viewer  v.1.0

MzIdentML Viewer is a tiny, easy-to-use .MZID files viewer with just a click. This software makes use of the MzIdentML API. The Proteomics Information Group has developed MzIdentML,

EigenMS  v.1.0

EigenMS is a stand-alone (or Matlab) bottom-up proteomics data normalization algorithms.

Maltcms  v.1.2.0

Maltcms - Modular Application Toolkit for Chromatography Mass-Spectrometry is a JAVA API for preprocessing, alignment, analysis and visualization of data stored in open file formats used in Proteomics and Metabolomics research.

Open2Dprot  v.1.0

Open2Dprot is an open-source proteomics project for the development of bioinformatic tools for n-dimensional protein expression data analysis of quantified protein expression across multiple samples from research experiments.

OpenMS  v.1.9.0

An open source framework for LC-MS based proteomics.

Pick List Editor  v.1.0

The goal of Picklist Editor is to display and modify pick lists before spot picking (in proteomics).

Prequips  v.86

A Java-based tool to visualize, integrate and analyze LC-MS/MS proteomics data.

Protein-ms  v.1.0

Tools for mass spectrometry, especially for protein mass spectrometry and proteomics: Quantification tools, converters for Applied Biosystems (Q Star and Q Trap), calculation of in-silico fragmentation spectra, converter for Mascot result files

Proteomic Mass Spectrometer Interface  v.1.0

A Mass Spectrometer B and Y ion labeling software for proteomics researchers.

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