Proteomics
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Rover v.2.3.4
Rover is a software to visualize and validate quantitative proteomics data from different sources. Manual validation of regulated proteins in quantitative proteomics has always been a tedious process.
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SPADE v.1.3
Build bioinformatics applications with this tool. The Structural Proteomics Application Development Environment (SPADE) is a free, Python-based, structural biology analysis and modeling toolkit,
MzIdentML Viewer v.1.0
MzIdentML Viewer is a tiny, easy-to-use .MZID files viewer with just a click. This software makes use of the MzIdentML API. The Proteomics Information Group has developed MzIdentML,
EigenMS v.1.0
EigenMS is a stand-alone (or Matlab) bottom-up proteomics data normalization algorithms.
Maltcms v.1.2.0
Maltcms - Modular Application Toolkit for Chromatography Mass-Spectrometry is a JAVA API for preprocessing, alignment, analysis and visualization of data stored in open file formats used in Proteomics and Metabolomics research.
Open2Dprot v.1.0
Open2Dprot is an open-source proteomics project for the development of bioinformatic tools for n-dimensional protein expression data analysis of quantified protein expression across multiple samples from research experiments.
OpenMS v.1.9.0
An open source framework for LC-MS based proteomics.
Pick List Editor v.1.0
The goal of Picklist Editor is to display and modify pick lists before spot picking (in proteomics).
Prequips v.86
A Java-based tool to visualize, integrate and analyze LC-MS/MS proteomics data.
Protein-ms v.1.0
Tools for mass spectrometry, especially for protein mass spectrometry and proteomics: Quantification tools, converters for Applied Biosystems (Q Star and Q Trap), calculation of in-silico fragmentation spectra, converter for Mascot result files
Proteomic Mass Spectrometer Interface v.1.0
A Mass Spectrometer B and Y ion labeling software for proteomics researchers.